GrapevineDiseaseV1, Main, Exploration, bibRecord, 000680

Grapevine leafroll-associated virus 1 occurs as genetically diverse populations.

Identifieur interne : 000680 ( Main/Exploration ); précédent : 000679; suivant : 000681

Grapevine leafroll-associated virus 1 occurs as genetically diverse populations.

Auteurs : Olufemi J. Alabi [États-Unis] ; Maher Al Rwahnih ; Gandhi Karthikeyan ; Sudarsana Poojari ; Marc Fuchs ; Adib Rowhani ; Rayapati A. Naidu

Source :

Phytopathology [ 0031-949X ] ; 2011.

RBID : pubmed:21830956

Descripteurs français

English descriptors

KwdEn :
- Amino Acid Sequence (MeSH), Base Sequence (MeSH), Biological Evolution (MeSH), California (MeSH), Capsid Proteins (genetics), Closteroviridae (classification), Closteroviridae (genetics), Closteroviridae (isolation & purification), Genetic Variation (genetics), Genetics, Population (MeSH), HSP70 Heat-Shock Proteins (genetics), Molecular Sequence Data (MeSH), New York (MeSH), Phylogeny (MeSH), Plant Diseases (virology), Recombination, Genetic (MeSH), Reverse Transcriptase Polymerase Chain Reaction (MeSH), Satellite Viruses (classification), Satellite Viruses (genetics), Satellite Viruses (isolation & purification), Sequence Analysis, DNA (MeSH), Viral Proteins (genetics), Vitis (virology), Washington (MeSH).
MESH :
- chemical , genetics : Capsid Proteins, HSP70 Heat-Shock Proteins, Viral Proteins.
- geographic : California, New York, Washington.
- classification : Closteroviridae, Satellite Viruses.
- genetics : Closteroviridae, Genetic Variation, Satellite Viruses.
- isolation & purification : Closteroviridae, Satellite Viruses.
- virology : Plant Diseases, Vitis.
- Amino Acid Sequence, Base Sequence, Biological Evolution, Genetics, Population, Molecular Sequence Data, Phylogeny, Recombination, Genetic, Reverse Transcriptase Polymerase Chain Reaction, Sequence Analysis, DNA.

Abstract

The genetic diversity of 34 isolates of Grapevine leafroll-associated virus 1 (GLRaV-1) from different wine, table, and ornamental grape cultivars in California, New York, and Washington States in the United States was investigated. Segments of the heat-shock protein 70 homolog (HSP70h) gene, coat protein (CP) gene, coat protein duplicate 2 (CPd2) gene, and open reading frame 9 (p24) were amplified by reverse-transcription polymerase chain reaction, cloned, and sequenced. A pairwise comparison of nucleotide sequences revealed intra- and interisolate sequence diversity, with CPd2 and HSP70h being the most and the least divergent, respectively, among the four genomic regions studied. The normalized values for the ratio of nonsynonymous substitutions per nonsynonymous site to synonymous substitutions per synonymous site indicated different purifying selection pressures acting on each of the four genomic regions, with the CP and CPd2 being subjected to the strongest and weakest functional constraints, respectively. A global phylogenetic analysis of sequences from the four genomic regions revealed segregation of GLRaV-1 isolates into three major clades and a lack of clearly defined clustering by geographical origin. In contrast, only two lineages were apparent when the CP and CPd2 gene sequences were used in phylogenetic analyses. Putative recombination events were revealed among the HSP70h, CP, and p24 sequences. The genetic landscape of GLRaV-1 populations presented in this study provides a foundation for better understanding of the epidemiology of grapevine leafroll disease across grape-growing regions in the United States. In addition, this study will benefit grape clean plant programs across the country in improving the sanitary status of planting materials provided to nurseries and grape growers.

DOI: 10.1094/PHYTO-04-11-0114
PubMed: 21830956

Affiliations:

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 000669
to stream Main, to step Curation: 000669

Le document en format XML

<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Grapevine leafroll-associated virus 1 occurs as genetically diverse populations.</title>
<author><name sortKey="Alabi, Olufemi J" sort="Alabi, Olufemi J" uniqKey="Alabi O" first="Olufemi J" last="Alabi">Olufemi J. Alabi</name>
<affiliation wicri:level="2"><nlm:affiliation>Department of Plant Pathology, Washington State University, WA, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Plant Pathology, Washington State University, WA</wicri:regionArea>
<placeName><region type="state">Washington (État)</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Al Rwahnih, Maher" sort="Al Rwahnih, Maher" uniqKey="Al Rwahnih M" first="Maher" last="Al Rwahnih">Maher Al Rwahnih</name>
</author>
<author><name sortKey="Karthikeyan, Gandhi" sort="Karthikeyan, Gandhi" uniqKey="Karthikeyan G" first="Gandhi" last="Karthikeyan">Gandhi Karthikeyan</name>
</author>
<author><name sortKey="Poojari, Sudarsana" sort="Poojari, Sudarsana" uniqKey="Poojari S" first="Sudarsana" last="Poojari">Sudarsana Poojari</name>
</author>
<author><name sortKey="Fuchs, Marc" sort="Fuchs, Marc" uniqKey="Fuchs M" first="Marc" last="Fuchs">Marc Fuchs</name>
</author>
<author><name sortKey="Rowhani, Adib" sort="Rowhani, Adib" uniqKey="Rowhani A" first="Adib" last="Rowhani">Adib Rowhani</name>
</author>
<author><name sortKey="Naidu, Rayapati A" sort="Naidu, Rayapati A" uniqKey="Naidu R" first="Rayapati A" last="Naidu">Rayapati A. Naidu</name>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PubMed</idno>
<date when="2011">2011</date>
<idno type="RBID">pubmed:21830956</idno>
<idno type="pmid">21830956</idno>
<idno type="doi">10.1094/PHYTO-04-11-0114</idno>
<idno type="wicri:Area/Main/Corpus">000669</idno>
<idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000669</idno>
<idno type="wicri:Area/Main/Curation">000669</idno>
<idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000669</idno>
<idno type="wicri:Area/Main/Exploration">000669</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en">Grapevine leafroll-associated virus 1 occurs as genetically diverse populations.</title>
<author><name sortKey="Alabi, Olufemi J" sort="Alabi, Olufemi J" uniqKey="Alabi O" first="Olufemi J" last="Alabi">Olufemi J. Alabi</name>
<affiliation wicri:level="2"><nlm:affiliation>Department of Plant Pathology, Washington State University, WA, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Plant Pathology, Washington State University, WA</wicri:regionArea>
<placeName><region type="state">Washington (État)</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Al Rwahnih, Maher" sort="Al Rwahnih, Maher" uniqKey="Al Rwahnih M" first="Maher" last="Al Rwahnih">Maher Al Rwahnih</name>
</author>
<author><name sortKey="Karthikeyan, Gandhi" sort="Karthikeyan, Gandhi" uniqKey="Karthikeyan G" first="Gandhi" last="Karthikeyan">Gandhi Karthikeyan</name>
</author>
<author><name sortKey="Poojari, Sudarsana" sort="Poojari, Sudarsana" uniqKey="Poojari S" first="Sudarsana" last="Poojari">Sudarsana Poojari</name>
</author>
<author><name sortKey="Fuchs, Marc" sort="Fuchs, Marc" uniqKey="Fuchs M" first="Marc" last="Fuchs">Marc Fuchs</name>
</author>
<author><name sortKey="Rowhani, Adib" sort="Rowhani, Adib" uniqKey="Rowhani A" first="Adib" last="Rowhani">Adib Rowhani</name>
</author>
<author><name sortKey="Naidu, Rayapati A" sort="Naidu, Rayapati A" uniqKey="Naidu R" first="Rayapati A" last="Naidu">Rayapati A. Naidu</name>
</author>
</analytic>
<series><title level="j">Phytopathology</title>
<idno type="ISSN">0031-949X</idno>
<imprint><date when="2011" type="published">2011</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Amino Acid Sequence (MeSH)</term>
<term>Base Sequence (MeSH)</term>
<term>Biological Evolution (MeSH)</term>
<term>California (MeSH)</term>
<term>Capsid Proteins (genetics)</term>
<term>Closteroviridae (classification)</term>
<term>Closteroviridae (genetics)</term>
<term>Closteroviridae (isolation & purification)</term>
<term>Genetic Variation (genetics)</term>
<term>Genetics, Population (MeSH)</term>
<term>HSP70 Heat-Shock Proteins (genetics)</term>
<term>Molecular Sequence Data (MeSH)</term>
<term>New York (MeSH)</term>
<term>Phylogeny (MeSH)</term>
<term>Plant Diseases (virology)</term>
<term>Recombination, Genetic (MeSH)</term>
<term>Reverse Transcriptase Polymerase Chain Reaction (MeSH)</term>
<term>Satellite Viruses (classification)</term>
<term>Satellite Viruses (genetics)</term>
<term>Satellite Viruses (isolation & purification)</term>
<term>Sequence Analysis, DNA (MeSH)</term>
<term>Viral Proteins (genetics)</term>
<term>Vitis (virology)</term>
<term>Washington (MeSH)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de séquence d'ADN (MeSH)</term>
<term>Californie (MeSH)</term>
<term>Closteroviridae (classification)</term>
<term>Closteroviridae (génétique)</term>
<term>Closteroviridae (isolement et purification)</term>
<term>Données de séquences moléculaires (MeSH)</term>
<term>Génétique des populations (MeSH)</term>
<term>Maladies des plantes (virologie)</term>
<term>Phylogenèse (MeSH)</term>
<term>Protéines de capside (génétique)</term>
<term>Protéines du choc thermique HSP70 (génétique)</term>
<term>Protéines virales (génétique)</term>
<term>RT-PCR (MeSH)</term>
<term>Recombinaison génétique (MeSH)</term>
<term>Séquence d'acides aminés (MeSH)</term>
<term>Séquence nucléotidique (MeSH)</term>
<term>Variation génétique (génétique)</term>
<term>Virus satellites (classification)</term>
<term>Virus satellites (génétique)</term>
<term>Virus satellites (isolement et purification)</term>
<term>Vitis (virologie)</term>
<term>Washington (MeSH)</term>
<term>État de New York (MeSH)</term>
<term>Évolution biologique (MeSH)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Capsid Proteins</term>
<term>HSP70 Heat-Shock Proteins</term>
<term>Viral Proteins</term>
</keywords>
<keywords scheme="MESH" type="geographic" xml:lang="en"><term>California</term>
<term>New York</term>
<term>Washington</term>
</keywords>
<keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Closteroviridae</term>
<term>Satellite Viruses</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Closteroviridae</term>
<term>Genetic Variation</term>
<term>Satellite Viruses</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Closteroviridae</term>
<term>Protéines de capside</term>
<term>Protéines du choc thermique HSP70</term>
<term>Protéines virales</term>
<term>Variation génétique</term>
<term>Virus satellites</term>
</keywords>
<keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Closteroviridae</term>
<term>Satellite Viruses</term>
</keywords>
<keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Closteroviridae</term>
<term>Virus satellites</term>
</keywords>
<keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Maladies des plantes</term>
<term>Vitis</term>
</keywords>
<keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Plant Diseases</term>
<term>Vitis</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Amino Acid Sequence</term>
<term>Base Sequence</term>
<term>Biological Evolution</term>
<term>Genetics, Population</term>
<term>Molecular Sequence Data</term>
<term>Phylogeny</term>
<term>Recombination, Genetic</term>
<term>Reverse Transcriptase Polymerase Chain Reaction</term>
<term>Sequence Analysis, DNA</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ADN</term>
<term>Californie</term>
<term>Données de séquences moléculaires</term>
<term>Génétique des populations</term>
<term>Phylogenèse</term>
<term>RT-PCR</term>
<term>Recombinaison génétique</term>
<term>Séquence d'acides aminés</term>
<term>Séquence nucléotidique</term>
<term>Washington</term>
<term>État de New York</term>
<term>Évolution biologique</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">The genetic diversity of 34 isolates of Grapevine leafroll-associated virus 1 (GLRaV-1) from different wine, table, and ornamental grape cultivars in California, New York, and Washington States in the United States was investigated. Segments of the heat-shock protein 70 homolog (HSP70h) gene, coat protein (CP) gene, coat protein duplicate 2 (CPd2) gene, and open reading frame 9 (p24) were amplified by reverse-transcription polymerase chain reaction, cloned, and sequenced. A pairwise comparison of nucleotide sequences revealed intra- and interisolate sequence diversity, with CPd2 and HSP70h being the most and the least divergent, respectively, among the four genomic regions studied. The normalized values for the ratio of nonsynonymous substitutions per nonsynonymous site to synonymous substitutions per synonymous site indicated different purifying selection pressures acting on each of the four genomic regions, with the CP and CPd2 being subjected to the strongest and weakest functional constraints, respectively. A global phylogenetic analysis of sequences from the four genomic regions revealed segregation of GLRaV-1 isolates into three major clades and a lack of clearly defined clustering by geographical origin. In contrast, only two lineages were apparent when the CP and CPd2 gene sequences were used in phylogenetic analyses. Putative recombination events were revealed among the HSP70h, CP, and p24 sequences. The genetic landscape of GLRaV-1 populations presented in this study provides a foundation for better understanding of the epidemiology of grapevine leafroll disease across grape-growing regions in the United States. In addition, this study will benefit grape clean plant programs across the country in improving the sanitary status of planting materials provided to nurseries and grape growers.</div>
</front>
</TEI>
<pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">21830956</PMID>
<DateCompleted><Year>2012</Year>
<Month>10</Month>
<Day>25</Day>
</DateCompleted>
<DateRevised><Year>2011</Year>
<Month>11</Month>
<Day>10</Day>
</DateRevised>
<Article PubModel="Print"><Journal><ISSN IssnType="Print">0031-949X</ISSN>
<JournalIssue CitedMedium="Print"><Volume>101</Volume>
<Issue>12</Issue>
<PubDate><Year>2011</Year>
<Month>Dec</Month>
</PubDate>
</JournalIssue>
<Title>Phytopathology</Title>
<ISOAbbreviation>Phytopathology</ISOAbbreviation>
</Journal>
<ArticleTitle>Grapevine leafroll-associated virus 1 occurs as genetically diverse populations.</ArticleTitle>
<Pagination><MedlinePgn>1446-56</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1094/PHYTO-04-11-0114</ELocationID>
<Abstract><AbstractText>The genetic diversity of 34 isolates of Grapevine leafroll-associated virus 1 (GLRaV-1) from different wine, table, and ornamental grape cultivars in California, New York, and Washington States in the United States was investigated. Segments of the heat-shock protein 70 homolog (HSP70h) gene, coat protein (CP) gene, coat protein duplicate 2 (CPd2) gene, and open reading frame 9 (p24) were amplified by reverse-transcription polymerase chain reaction, cloned, and sequenced. A pairwise comparison of nucleotide sequences revealed intra- and interisolate sequence diversity, with CPd2 and HSP70h being the most and the least divergent, respectively, among the four genomic regions studied. The normalized values for the ratio of nonsynonymous substitutions per nonsynonymous site to synonymous substitutions per synonymous site indicated different purifying selection pressures acting on each of the four genomic regions, with the CP and CPd2 being subjected to the strongest and weakest functional constraints, respectively. A global phylogenetic analysis of sequences from the four genomic regions revealed segregation of GLRaV-1 isolates into three major clades and a lack of clearly defined clustering by geographical origin. In contrast, only two lineages were apparent when the CP and CPd2 gene sequences were used in phylogenetic analyses. Putative recombination events were revealed among the HSP70h, CP, and p24 sequences. The genetic landscape of GLRaV-1 populations presented in this study provides a foundation for better understanding of the epidemiology of grapevine leafroll disease across grape-growing regions in the United States. In addition, this study will benefit grape clean plant programs across the country in improving the sanitary status of planting materials provided to nurseries and grape growers.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Alabi</LastName>
<ForeName>Olufemi J</ForeName>
<Initials>OJ</Initials>
<AffiliationInfo><Affiliation>Department of Plant Pathology, Washington State University, WA, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Al Rwahnih</LastName>
<ForeName>Maher</ForeName>
<Initials>M</Initials>
</Author>
<Author ValidYN="Y"><LastName>Karthikeyan</LastName>
<ForeName>Gandhi</ForeName>
<Initials>G</Initials>
</Author>
<Author ValidYN="Y"><LastName>Poojari</LastName>
<ForeName>Sudarsana</ForeName>
<Initials>S</Initials>
</Author>
<Author ValidYN="Y"><LastName>Fuchs</LastName>
<ForeName>Marc</ForeName>
<Initials>M</Initials>
</Author>
<Author ValidYN="Y"><LastName>Rowhani</LastName>
<ForeName>Adib</ForeName>
<Initials>A</Initials>
</Author>
<Author ValidYN="Y"><LastName>Naidu</LastName>
<ForeName>Rayapati A</ForeName>
<Initials>RA</Initials>
</Author>
</AuthorList>
<Language>eng</Language>
<DataBankList CompleteYN="Y"><DataBank><DataBankName>GENBANK</DataBankName>
<AccessionNumberList><AccessionNumber>HQ833472</AccessionNumber>
<AccessionNumber>HQ833473</AccessionNumber>
<AccessionNumber>HQ833474</AccessionNumber>
<AccessionNumber>HQ833475</AccessionNumber>
<AccessionNumber>HQ833476</AccessionNumber>
<AccessionNumber>HQ833477</AccessionNumber>
<AccessionNumber>JF811752</AccessionNumber>
<AccessionNumber>JF811753</AccessionNumber>
<AccessionNumber>JF811754</AccessionNumber>
<AccessionNumber>JF811755</AccessionNumber>
<AccessionNumber>JF811756</AccessionNumber>
<AccessionNumber>JF811757</AccessionNumber>
<AccessionNumber>JF811758</AccessionNumber>
<AccessionNumber>JF811759</AccessionNumber>
<AccessionNumber>JF811760</AccessionNumber>
<AccessionNumber>JF811761</AccessionNumber>
<AccessionNumber>JF811762</AccessionNumber>
<AccessionNumber>JF811763</AccessionNumber>
<AccessionNumber>JF811764</AccessionNumber>
<AccessionNumber>JF811765</AccessionNumber>
<AccessionNumber>JF811766</AccessionNumber>
<AccessionNumber>JF811767</AccessionNumber>
<AccessionNumber>JF811768</AccessionNumber>
<AccessionNumber>JF811769</AccessionNumber>
<AccessionNumber>JF811770</AccessionNumber>
<AccessionNumber>JF811771</AccessionNumber>
<AccessionNumber>JF811772</AccessionNumber>
<AccessionNumber>JF811773</AccessionNumber>
<AccessionNumber>JF811774</AccessionNumber>
<AccessionNumber>JF811775</AccessionNumber>
<AccessionNumber>JF811776</AccessionNumber>
<AccessionNumber>JF811777</AccessionNumber>
<AccessionNumber>JF811778</AccessionNumber>
<AccessionNumber>JF811779</AccessionNumber>
<AccessionNumber>JF811780</AccessionNumber>
<AccessionNumber>JF811781</AccessionNumber>
<AccessionNumber>JF811782</AccessionNumber>
<AccessionNumber>JF811783</AccessionNumber>
<AccessionNumber>JF811784</AccessionNumber>
<AccessionNumber>JF811785</AccessionNumber>
<AccessionNumber>JF811786</AccessionNumber>
<AccessionNumber>JF811787</AccessionNumber>
<AccessionNumber>JF811788</AccessionNumber>
<AccessionNumber>JF811789</AccessionNumber>
<AccessionNumber>JF811790</AccessionNumber>
<AccessionNumber>JF811791</AccessionNumber>
<AccessionNumber>JF811792</AccessionNumber>
<AccessionNumber>JF811793</AccessionNumber>
<AccessionNumber>JF811794</AccessionNumber>
<AccessionNumber>JF811795</AccessionNumber>
<AccessionNumber>JF811796</AccessionNumber>
<AccessionNumber>JF811797</AccessionNumber>
<AccessionNumber>JF811798</AccessionNumber>
<AccessionNumber>JF811799</AccessionNumber>
<AccessionNumber>JF811800</AccessionNumber>
<AccessionNumber>JF811801</AccessionNumber>
<AccessionNumber>JF811802</AccessionNumber>
<AccessionNumber>JF811803</AccessionNumber>
<AccessionNumber>JF811804</AccessionNumber>
<AccessionNumber>JF811805</AccessionNumber>
<AccessionNumber>JF811806</AccessionNumber>
<AccessionNumber>JF811807</AccessionNumber>
<AccessionNumber>JF811808</AccessionNumber>
<AccessionNumber>JF811809</AccessionNumber>
<AccessionNumber>JF811810</AccessionNumber>
<AccessionNumber>JF811811</AccessionNumber>
<AccessionNumber>JF811812</AccessionNumber>
<AccessionNumber>JF811813</AccessionNumber>
<AccessionNumber>JF811814</AccessionNumber>
<AccessionNumber>JF811815</AccessionNumber>
<AccessionNumber>JF811816</AccessionNumber>
<AccessionNumber>JF811817</AccessionNumber>
<AccessionNumber>JF811818</AccessionNumber>
<AccessionNumber>JF811819</AccessionNumber>
<AccessionNumber>JF811820</AccessionNumber>
<AccessionNumber>JF811821</AccessionNumber>
<AccessionNumber>JF811822</AccessionNumber>
<AccessionNumber>JF811823</AccessionNumber>
<AccessionNumber>JF811824</AccessionNumber>
<AccessionNumber>JF811825</AccessionNumber>
<AccessionNumber>JF811826</AccessionNumber>
<AccessionNumber>JF811827</AccessionNumber>
<AccessionNumber>JF811828</AccessionNumber>
<AccessionNumber>JF811829</AccessionNumber>
<AccessionNumber>JF811830</AccessionNumber>
<AccessionNumber>JF811831</AccessionNumber>
<AccessionNumber>JF811832</AccessionNumber>
<AccessionNumber>JF811833</AccessionNumber>
<AccessionNumber>JF811834</AccessionNumber>
<AccessionNumber>JF811835</AccessionNumber>
<AccessionNumber>JF811836</AccessionNumber>
<AccessionNumber>JF811837</AccessionNumber>
<AccessionNumber>JF811838</AccessionNumber>
<AccessionNumber>JF811839</AccessionNumber>
<AccessionNumber>JF811840</AccessionNumber>
<AccessionNumber>JF811841</AccessionNumber>
<AccessionNumber>JF811842</AccessionNumber>
<AccessionNumber>JF811843</AccessionNumber>
<AccessionNumber>JF811844</AccessionNumber>
<AccessionNumber>JF811845</AccessionNumber>
<AccessionNumber>JF811846</AccessionNumber>
<AccessionNumber>JF811847</AccessionNumber>
<AccessionNumber>JF811848</AccessionNumber>
<AccessionNumber>JF811849</AccessionNumber>
<AccessionNumber>JF811850</AccessionNumber>
<AccessionNumber>JF811851</AccessionNumber>
<AccessionNumber>JF811852</AccessionNumber>
<AccessionNumber>JF811853</AccessionNumber>
<AccessionNumber>JF811854</AccessionNumber>
<AccessionNumber>JF811855</AccessionNumber>
<AccessionNumber>JF811856</AccessionNumber>
<AccessionNumber>JF811857</AccessionNumber>
<AccessionNumber>JF811858</AccessionNumber>
<AccessionNumber>JF811859</AccessionNumber>
<AccessionNumber>JF811860</AccessionNumber>
<AccessionNumber>JF811861</AccessionNumber>
<AccessionNumber>JF811862</AccessionNumber>
<AccessionNumber>JF811863</AccessionNumber>
<AccessionNumber>JF811864</AccessionNumber>
<AccessionNumber>JF811865</AccessionNumber>
<AccessionNumber>JF811866</AccessionNumber>
<AccessionNumber>JF811867</AccessionNumber>
<AccessionNumber>JF811868</AccessionNumber>
<AccessionNumber>JF811869</AccessionNumber>
<AccessionNumber>JF811870</AccessionNumber>
<AccessionNumber>JF811871</AccessionNumber>
<AccessionNumber>JF811872</AccessionNumber>
<AccessionNumber>JF811873</AccessionNumber>
<AccessionNumber>JF811874</AccessionNumber>
<AccessionNumber>JF811875</AccessionNumber>
<AccessionNumber>JF811876</AccessionNumber>
<AccessionNumber>JF811877</AccessionNumber>
<AccessionNumber>JF811878</AccessionNumber>
<AccessionNumber>JF811879</AccessionNumber>
<AccessionNumber>JF811880</AccessionNumber>
<AccessionNumber>JF811881</AccessionNumber>
<AccessionNumber>JF811882</AccessionNumber>
<AccessionNumber>JF811883</AccessionNumber>
<AccessionNumber>JF811884</AccessionNumber>
<AccessionNumber>JF811885</AccessionNumber>
<AccessionNumber>JF811886</AccessionNumber>
<AccessionNumber>JF811887</AccessionNumber>
<AccessionNumber>JF811888</AccessionNumber>
<AccessionNumber>JF811889</AccessionNumber>
<AccessionNumber>JF811890</AccessionNumber>
<AccessionNumber>JF811891</AccessionNumber>
<AccessionNumber>JF811892</AccessionNumber>
<AccessionNumber>JF811893</AccessionNumber>
<AccessionNumber>JF811894</AccessionNumber>
<AccessionNumber>JF811895</AccessionNumber>
<AccessionNumber>JF811896</AccessionNumber>
<AccessionNumber>JF811897</AccessionNumber>
<AccessionNumber>JF811898</AccessionNumber>
<AccessionNumber>JF811899</AccessionNumber>
<AccessionNumber>JF811900</AccessionNumber>
<AccessionNumber>JF811901</AccessionNumber>
<AccessionNumber>JF811902</AccessionNumber>
<AccessionNumber>JF811903</AccessionNumber>
<AccessionNumber>JF811904</AccessionNumber>
<AccessionNumber>JF811905</AccessionNumber>
<AccessionNumber>JF811906</AccessionNumber>
</AccessionNumberList>
</DataBank>
</DataBankList>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
<PublicationType UI="D013486">Research Support, U.S. Gov't, Non-P.H.S.</PublicationType>
</PublicationTypeList>
</Article>
<MedlineJournalInfo><Country>United States</Country>
<MedlineTA>Phytopathology</MedlineTA>
<NlmUniqueID>9427222</NlmUniqueID>
<ISSNLinking>0031-949X</ISSNLinking>
</MedlineJournalInfo>
<ChemicalList><Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D036022">Capsid Proteins</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D018840">HSP70 Heat-Shock Proteins</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D014764">Viral Proteins</NameOfSubstance>
</Chemical>
</ChemicalList>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList><MeshHeading><DescriptorName UI="D000595" MajorTopicYN="N">Amino Acid Sequence</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D001483" MajorTopicYN="N">Base Sequence</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005075" MajorTopicYN="N">Biological Evolution</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D002140" MajorTopicYN="N" Type="Geographic">California</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D036022" MajorTopicYN="N">Capsid Proteins</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D029381" MajorTopicYN="N">Closteroviridae</DescriptorName>
<QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
<QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D014644" MajorTopicYN="N">Genetic Variation</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005828" MajorTopicYN="N">Genetics, Population</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D018840" MajorTopicYN="N">HSP70 Heat-Shock Proteins</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D009518" MajorTopicYN="N" Type="Geographic">New York</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName>
<QualifierName UI="Q000821" MajorTopicYN="N">virology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D011995" MajorTopicYN="N">Recombination, Genetic</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D020133" MajorTopicYN="N">Reverse Transcriptase Polymerase Chain Reaction</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D012526" MajorTopicYN="N">Satellite Viruses</DescriptorName>
<QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
<QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D014764" MajorTopicYN="N">Viral Proteins</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D027843" MajorTopicYN="N">Vitis</DescriptorName>
<QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D014861" MajorTopicYN="N" Type="Geographic">Washington</DescriptorName>
</MeshHeading>
</MeshHeadingList>
</MedlineCitation>
<PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2011</Year>
<Month>8</Month>
<Day>12</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="pubmed"><Year>2011</Year>
<Month>8</Month>
<Day>13</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline"><Year>2012</Year>
<Month>10</Month>
<Day>26</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>ppublish</PublicationStatus>
<ArticleIdList><ArticleId IdType="pubmed">21830956</ArticleId>
<ArticleId IdType="doi">10.1094/PHYTO-04-11-0114</ArticleId>
</ArticleIdList>
</PubmedData>
</pubmed>
<affiliations><list><country><li>États-Unis</li>
</country>
<region><li>Washington (État)</li>
</region>
</list>
<tree><noCountry><name sortKey="Al Rwahnih, Maher" sort="Al Rwahnih, Maher" uniqKey="Al Rwahnih M" first="Maher" last="Al Rwahnih">Maher Al Rwahnih</name>
<name sortKey="Fuchs, Marc" sort="Fuchs, Marc" uniqKey="Fuchs M" first="Marc" last="Fuchs">Marc Fuchs</name>
<name sortKey="Karthikeyan, Gandhi" sort="Karthikeyan, Gandhi" uniqKey="Karthikeyan G" first="Gandhi" last="Karthikeyan">Gandhi Karthikeyan</name>
<name sortKey="Naidu, Rayapati A" sort="Naidu, Rayapati A" uniqKey="Naidu R" first="Rayapati A" last="Naidu">Rayapati A. Naidu</name>
<name sortKey="Poojari, Sudarsana" sort="Poojari, Sudarsana" uniqKey="Poojari S" first="Sudarsana" last="Poojari">Sudarsana Poojari</name>
<name sortKey="Rowhani, Adib" sort="Rowhani, Adib" uniqKey="Rowhani A" first="Adib" last="Rowhani">Adib Rowhani</name>
</noCountry>
<country name="États-Unis"><region name="Washington (État)"><name sortKey="Alabi, Olufemi J" sort="Alabi, Olufemi J" uniqKey="Alabi O" first="Olufemi J" last="Alabi">Olufemi J. Alabi</name>
</region>
</country>
</tree>
</affiliations>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Bois/explor/GrapevineDiseaseV1/Data/Main/Exploration

HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000680 | SxmlIndent | more

HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000680 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Bois
   |area=    GrapevineDiseaseV1
   |flux=    Main
   |étape=   Exploration
   |type=    RBID
   |clé=     pubmed:21830956
   |texte=   Grapevine leafroll-associated virus 1 occurs as genetically diverse populations.
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i   -Sk "pubmed:21830956" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd   \
       | NlmPubMed2Wicri -a GrapevineDiseaseV1

This area was generated with Dilib version V0.6.37.
Data generation: Wed Nov 18 16:11:34 2020. Site generation: Wed Nov 18 16:12:50 2020

	Serveur d'exploration sur les maladies des plantes grimpantes
	Attention, ce site est en cours de développement ! Attention, site généré par des moyens informatiques à partir de corpus bruts. Les informations ne sont donc pas validées.

Serveur d'exploration sur les maladies des plantes grimpantes

Grapevine leafroll-associated virus 1 occurs as genetically diverse populations.

Grapevine leafroll-associated virus 1 occurs as genetically diverse populations.

Source :

Descripteurs français

English descriptors

Abstract

Links toward previous steps (curation, corpus...)

Le document en format XML

Pour manipuler ce document sous Unix (Dilib)

Pour mettre un lien sur cette page dans le réseau Wicri

Pour générer des pages wiki